Last updated: 2020-03-23

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Knit directory: EvaluateSingleCellClustering/

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Rmd 664ab0d Ming Tang 2020-03-22 Start workflowr project.

This is the website for demonstrating how to use the scclusteval R package. This R package works with the output from the Snakemake workflow.

Readers can download the datasets at https://osf.io/rfbcg/ and follow the analysis in the Rmarkdown files.

You can find the analysis for the mixology dataset and the 5k pbmc dataset in the Content drop list. We also run the Snakemake workflow for a neuron dataset from Allen Brain Institute and you can find the data in the osf.io link above.

Readers can follow the examples of the mixology and pbmc dataset and explore the neuron dataset yourself. Have fun!