Last updated: 2019-07-30
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Knit directory: scRNA-seq-workshop-Fall-2019/
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This two week bioinformatics course run by the FAS Informatics group will cover both fundamental tools and applied methods in bioinformatics. The first week (August 12th-16th) will introduce the basics of programming in R and Python, and provide the foundational tools for the topics covered in week 2. This part assumes no prior (extensive) experience with either R or Python, although we will move fast and some prior exposure (even if limited) will be helpful.
The second week (August 19th - 22nd) will cover common bioinformatic tools and methods. This will include in-depth modules on RNA-seq analysis (including single-cell RNA-seq), read mapping, variant calling, analysis of population genetic data, manipulation of genomic data types (such as ChIP-seq or ATAC-seq peak data) and other topics.
Participation in the first week is not required to participate in the second week if you have a strong background in the required tools (R and/or Python depending on the topic). Participants who attend at least 4 days of the course will have the opportunity to get course credit.
In addition to the sections below, there will be two public seminars for course participants, featuring Dr. John Novembre (University of Chicago) and Dr. Mansi Srivastava (Harvard University).
Please register for all sections below you are intending to participate in. Exact times are to be determined but will be announced as soon as possible.
In order to ensure space for all participants, a no-show fee of $50 will be charged. If you cannot attend a session you are signed for, please contact us at least 12 hours in advance to avoid the fee.