ChIP-seq data analysis: Glossary

Key Points

Introduction: ChIP-seq assay

  • ChIP-seq is sequencing specific regions of the genome

  • ChIP-seq peaks can give insights of where the protein of interest is enriched in the genome

  • target 20 million reads for ChIP-seq experiment
ChIP-seq preprocessing

  • Input control is critical in controlling false postive peaks

  • bedgraph is the raw signal file for visualizing read density

Glossary

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